Papers


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Reviews


Deep learning in genomics

Reviews

Classic DL in genomics

TF binding

RNA modeling

Attention-based models in genomics

https://academic.oup.com/bib/advance-article-abstract/doi/10.1093/bib/bbaa159/5890498?redirectedFrom=fulltext

Interpretability/Explainability


Advanced Topics


Adversarial training

Adversarial training tutorial https://adversarial-ml-tutorial.org/

Protein modeling


Deep Learning for Genomics


TF Binding


RBP Binding


Higher-order interactions


Proteins


Attention/Transformers


Deep Learning


Interpretability


Robustness


Variational Inference/Normalizing Flows


Dimensionality Reduction


Other