The Koo Lab studies the functional impact of genomic mutations through a computational lens using data-driven machine learning solutions. We are broadly interested in applications for studying gene regulation and protein (dys)function. Our approach develops methods to interpret high-performing deep learning models to distill knowledge that they learn from big, noisy biological sequence data. Our goal is to elucidate biological mechanisms that underlie sequence-function relationships, with a broader aim of advancing precision medicine for complex diseases, including cancer. We are part of the Simons Center for Quantitative Biology and the Cancer Center at Cold Spring Harbor Laboratory.
Lab News
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May 17, 2023 -- Kaeli Rizzo officially joins lab! Woohoo!
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May 9, 2023 -- Paper entitled "Correcting gradient-based interpretations of deep neural networks for genomics" is published in Genome Biology!
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May 4, 2023 -- Paper entitled "EvoAug, improving generalization and interpretability of genomic deep neural networks with evolution-inspired data augmentations" is published in Genome Biology!
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Apr 14, 2023 -- Anirban Sarkar joins lab as a postdoc! Welcome Anirban!
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Apr 10, 2023 -- Maha Syed, a CSHL grad student, starts rotation. Welcome Maha!
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Mar 27, 2023 -- Alessandro Crnjar joins lab as a postdoc! Welcome Alessandro!
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Feb 13, 2023 -- June He, a grad student in SBU Genetics, starts rotation. Welcome June!