The Koo Lab studies gene regulation through a computational lens using data-driven machine learning solutions. Our approach develops deep learning methods to infer sequence-function relationships that underlie high-throughput functional genomics data. Through model interpretability, we aim to elucidate cis-regulatory mechanisms -- the complex coordination of sequence elements such as motifs -- with a broader aim of advancing precision medicine for complex diseases, including cancer. We are part of the Simons Center for Quantitative Biology and the NCI-designated Cancer Center at Cold Spring Harbor Laboratory.



Lab News

  • Nov 17, 2024 -- Jessica's manuscript on "Uncertainty-aware genomic deep learning with knowledge distillation" is on bioRxiv! Congrats Jessica!
  • Nov 16, 2024 -- Jessica and Peter give oral presentations at Biological Data Science Conference! Evan and Shivani gave poster presentations!
  • Nov 4, 2024 -- Brian Schilder starts postdoc! Welcome Brian!
  • Sep 23, 2024 -- Shushan wins the International Birnstiel Award for her PhD thesis research! Congrats Shush!
  • Sep 19, 2024 -- CREME is published in Nature Genetics! Congrats Shush!
  • Sep 5, 2024 -- Anirban presents D3 and Jessica presents ensemble distillation at MLCB!
  • Sep 4, 2024 -- HIPPO is now a preprint! Congrats Jakub!