The Koo Lab studies gene regulation through a computational lens using data-driven machine learning solutions. Our approach develops deep learning methods to infer sequence-function relationships that underlie high-throughput functional genomics data. Through model interpretability, we aim to elucidate cis-regulatory mechanisms -- the complex coordination of sequence elements such as motifs -- with a broader aim of advancing precision medicine for complex diseases, including cancer. We are part of the Simons Center for Quantitative Biology and the NCI-designated Cancer Center at Cold Spring Harbor Laboratory.
Lab News
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Jan 10, 2025 -- Jakub's new tool SpinPath, which enables fast and easy specimen-level inference in computational pathology is out on preprint!
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Jan 2, 2025 -- Yash was awarded the best Master's project at IIT Kharagpur for his work with the Koo Lab on data distillation! Congrats Yash!
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Dec 12, 2025 -- Peter is promoted to Associate Professor! Yahooooo!
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Dec 5, 2024 -- Nirali was awarded the best poster presentation at Annual Biomedical Research Conference for Minoritized Scientists (ABRCMS) conference! Woohoo!
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Nov 17, 2024 -- Jessica's manuscript on "Uncertainty-aware genomic deep learning with knowledge distillation" is on bioRxiv! Congrats Jessica!
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Nov 16, 2024 -- Jessica and Peter give oral presentations at Biological Data Science Conference! Evan and Shivani gave poster presentations!
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Nov 4, 2024 -- Brian Schilder starts postdoc! Welcome Brian!